PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID DCAR_026164
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Apiales; Apiineae; Apiaceae; Apioideae; Scandiceae; Daucinae; Daucus
Family LBD
Protein Properties Length: 223aa    MW: 23929.8 Da    PI: 5.2593
Description LBD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
DCAR_026164genomeARS-USDAView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF260144.72.7e-4510108199
       DUF260   1 aCaaCkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlkaelallk 98 
                  +CaaCk+lrrkC ++C++apyfp e+p+kfanvhk+FGasnv+kll++l +++reda++sl+yeAear+rdPvyG+vg i+ lq+q+e+l++el++++
  DCAR_026164  10 PCAACKFLRRKCMPNCIFAPYFPPEEPQKFANVHKIFGASNVTKLLNELLPHQREDAVNSLAYEAEARVRDPVYGCVGAISYLQRQVERLQKELDAAN 107
                  7*********************************************************************************************9987 PP

       DUF260  99 e 99 
                  +
  DCAR_026164 108 T 108
                  6 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5089128.1839110IPR004883Lateral organ boundaries, LOB
PfamPF031952.7E-4410107IPR004883Lateral organ boundaries, LOB
Sequence ? help Back to Top
Protein Sequence    Length: 223 aa     Download sequence    Send to blast
MASSNAYNSP CAACKFLRRK CMPNCIFAPY FPPEEPQKFA NVHKIFGASN VTKLLNELLP  60
HQREDAVNSL AYEAEARVRD PVYGCVGAIS YLQRQVERLQ KELDAANTDL IRFAWTEALP  120
PLPQGVRPID LIISTTRHNF VNLEGTTNIG ASNGNITTSF HQTPCATFSY PNIPWNSITF  180
DNSTSAADVI NPEGGGGGGG GGGAGGEPVL ESQMEYSSCS LA*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003525551.27e-82PREDICTED: protein LATERAL ORGAN BOUNDARIES-like
RefseqXP_006579579.17e-82PREDICTED: protein LATERAL ORGAN BOUNDARIES-like
RefseqXP_006579580.17e-82PREDICTED: protein LATERAL ORGAN BOUNDARIES-like
RefseqXP_006579581.17e-82PREDICTED: protein LATERAL ORGAN BOUNDARIES-like
SwissprotQ9FML43e-74LOB_ARATH; Protein LATERAL ORGAN BOUNDARIES
TrEMBLI6QJ634e-83I6QJ63_LOTJA; Elongated petiolule 1
STRINGGLYMA05G02530.22e-81(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA4324669
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G63090.45e-76LBD family protein